Institute has one Allopathic Health Center, situated in the Boys Hostel. It has all the facilities of a primary health care center and a ward of 4 beds. This health center has a physician, dispensary and other supporting staff to provide primary health care services and also to refer the critical patients. Institute also has an independent faculty of Traditional Tibetan Medicinal System named as Sowa Rigpa. The faculty runs a OPD clinic for consultation and a dispensary which provides Tibetan medicines formulated in the pharmacy of the faculty of Sowa Rigpa. The Sowa Rigpa clinic and dispensary is situated in the Sambhot Bhavan (New Academic Block) of the Institute.